Plugins listed on the old library can be found at old-library.qiime2.org.
A QIIME 2 plugin for quality control of sequence and feature data
Last updated: Tue May 27 2025
QIIME 2 plugin for functional annotation and taxonomic classification of shotgun metagenomes.
Last updated: Mon May 26 2025
Last updated: Thu May 22 2025
A Qiime plugin for MICOM.
Last updated: Mon May 19 2025
QIIME 2 plugin for (meta)genome assembly.
Last updated: Fri May 09 2025
q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾
Last updated: Thu May 08 2025
Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere
This plugin exists to define integration tests between interfaces and the framework.
Quality filtering for QIIME2
Qiime2 Sourmash Plugin
The first choice of wizard lizards for interactive, generalized microbiome data visualization!
vsearch plugin for QIIME 2
QIIME 2 plugin for machine learning prediction of sample data.
REference Sequence annotation and CuRatIon Pipeline
QIIME 2 plugin for paired sample comparisons
Support for multiple sequence alignment in QIIME 2.
QIIME 2 plugin supporting operations on feature tables.
Phylogenetic reconstruction, and operations on phylogenetic trees.
q2-amrfinderplus: QIIME 2 plugin to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences with AMRFinderPlus.
QIIME 2 plugin wrapping DADA2
QIIME 2 plugin supporting taxonomic classification
genome-sampler: sample viral genomes across time of isolation, location of isolation, and genome divergence.
Last updated: Mon Apr 07 2025
QIIME 2 plugin for generating kmers from biological sequences
Last updated: Sat Apr 05 2025
q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!
Last updated: Thu Apr 03 2025
QIIME 2 plugin for PICRUSt2
Last updated: Tue Mar 04 2025
QIIME 2 plugin to contextualize taxonomic abundance data into high-quality metabolic reconstruction of the human gut microbiota
Last updated: Mon Feb 03 2025